PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138339.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 279aa    MW: 30979.6 Da    PI: 4.5937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-2014104199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv++p+ +++s  + +pk+f ++ + +   ++t +l+   g +W+v +  +k +g  ++t+GW++F+++++Lk g+f++F +dg+++f   v+
  XP_009138339.1  14 FFKVFLPETASES--MAIPKSFNAHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRGVAYFTSGWSKFAEDHELKHGEFLTFVYDGSHTF--EVS 100
                     8999966666665..8******8555644..899****************..********************************998888..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     vf +
  XP_009138339.1 101 VFGR 104
                     8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2410107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2510107IPR015300DNA-binding pseudobarrel domain
CDDcd100178.24E-2112102No hitNo description
PROSITE profilePS5086313.67612105IPR003340B3 DNA binding domain
SMARTSM010192.8E-2314105IPR003340B3 DNA binding domain
PfamPF023627.0E-1714103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-6184263IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.54188276IPR003340B3 DNA binding domain
PROSITE profilePS508636.033241279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSESDEDVAD LPRFFKVFLP ETASESMAIP KSFNAHLQDP LPQTAKLQGI GGGVWTVSFK  60
KIRGVAYFTS GWSKFAEDHE LKHGEFLTFV YDGSHTFEVS VFGRSECKEI RAVVETVNLS  120
DANSDEEEEE DSSVVAADSN EGDDPSFHAG EDDEVSQSIN PVDSDDTVSV AEVVAGFPNL  180
EVESNPCFTT TLKKRIYDVL IPAAVVKEHG LTFCDRIKYI DGEGILDGAI LNCSYYGISF  240
KGWGRICRRN RLKENDTVHC EMLHIRKKVH SIKITITRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-171310710104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892220.0AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138339.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X1
RefseqXP_009138340.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X1
SwissprotQ8LAV55e-88REM20_ARATH; B3 domain-containing protein REM20
TrEMBLM4DMF91e-176M4DMF9_BRARP; Uncharacterized protein
STRINGBra017692.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-83B3 family protein